關於「HISAT2 manual」標籤，搜尋引擎有相關的訊息討論：

Manual | HISAT2。

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (whole-genome, transcriptome, and exome sequencing data) ...： 。

HISAT2 graph-based alignment of next generation sequencing ...。

HISAT2 is a fast and sensitive alignment program for mapping ... that HISAT2 will try to extend to full-length alignments (see the manual for details).： 。

HISAT - Center for Computational Biology。

2015年4月17日 · In addition to spliced alignment, HISAT handles reads involving indels and ... See the HISAT manual section on SAM output and the SAM ...： 。

HISAT - Center for Computational Biology。

hisat -x /path/to/index --sra-acc SRR353653; This eliminates the need to download SRA reads manually and to convert them into fasta/fastq format without ...： 。

Comparison of Burrows-Wheeler Transform-Based Mapping ... - NCBI。

2018年2月26日 · To our knowledge, this is the first evaluation of HISAT2 applied to ... Snelling W. M., Bennett G. L., Keele J. W., Kuehn L. A., ...。

Probably Correct: Rescuing Repeats with Short and Long Reads。

2020年12月31日 · Kim D., Langmead B., Salzberg S.L. HISAT: A fast spliced aligner with ... G.L., Sheppard K.S., Munger S.C., Korstanje R., Pardo-Manual de ...。

CIRCexplorer pipelines for circRNA annotation and quantification ...。

2021年2月12日 · Of note, in addition to HISAT2 [51] and TopHat-Fusion [52] that are shown ... of HISAT2 is at http://daehwankimlab.github.io/hisat2/manual/.。

HISAT2 on Ivy Linux VM - UVA Research Computing。

2018年2月1日 · HISAT2 is a fast and sensitive tool for aligning short reads against the ... For detailed information, please refer to HISAT2 [manual] ...： 。

HSRA: Hadoop-based spliced read aligner for RNA sequencing data。

2018年7月31日 · Source code in Java as well as a user's guide are publicly ... To do so, HSRA integrates the fast spliced aligner HISAT2 into Hadoop.。

Alignment and mapping methodology influence transcript ...。

2020年9月7日 · However, we explored, manually, some of the cases where ... Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.